PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.046300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 217aa    MW: 23860.6 Da    PI: 9.8534
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.046300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-391672561
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ 
  Cucsa.046300.1 16 TLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 72
                    689***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.0E-341671IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-271671IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5251771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDKPHHHQQQ QSSSGTLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV  60
PVGGGCRKNK RLKTSSSSST SVNANSTSPP SQNPRLLIHN PINSTTVPNI VSSSALNHTN  120
SSMFFGLDSI GGGSGGLGLS SSGLLSHFND PHQQPFSSNH FHHPTISFDR NSHLLGNIDP  180
NLMTSMKEIK IEDLNRLIIV VNSKAYVDID DTRNLY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-177LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-177LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134698.11e-143PREDICTED: dof zinc finger protein DOF1.4
TrEMBLA0A0A0KI371e-143A0A0A0KI37_CUCSA; Uncharacterized protein
STRINGVIT_10s0003g00040.t011e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.25e-35Dof family protein